Computational Biology · Machine Learning for Molecular Discovery

Saveena Solanki

I build deep-learning and multimodal AI frameworks to understand and design targeted therapeutics — from molecular glues and PROTACs to metabolite-mediated protein interactions, and scalable models that learn the language of chemistry.

Research Scholar, Department of Computational Biology, IIIT-Delhi · New Delhi, India

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Research interests

My research sits at the intersection of machine learning, molecular biology, and targeted therapeutics. I develop representation-learning and structure-aware deep-learning models for chemistry, proteins, signalling systems, and drug discovery. A central goal of my work is to convert large-scale biological and chemical data into mechanistic, testable hypotheses that can guide therapeutic design. Alongside my scientific work, I care deeply about clear scientific communication, visual explanation, and illustrations that make complex molecular systems accessible.

Targeted protein modulation

AI for molecular glues, PROTACs and ternary-complex design — degrading the "undruggable" with selectivity by design.

Metabolite-mediated interactions

Modelling how small molecules and metabolites stabilize, weaken or rewire protein–protein interactions.

Multimodal molecular ML

Representation learning that fuses structure, graphs, descriptors and chemical language into transferable embeddings.

Mechanism-aware models

Structure- and chemistry-aware deep learning that yields interpretable, mechanistic insight rather than black-box scores.

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Selected publications

Featured work
All publications
2025
PREPRINT

SynGlue: AI for targeted therapeutics — molecular glues & PROTACs

Solanki S., … Ahuja G.

bioRxiv

doi.org/10.1101/2025.08.28.672835 →
2025
JOURNAL

Deep learning reveals endogenous sterols as allosteric modulators of the GPCR–Gα interface

Solanki S., Sharma A.K., Arora S., Kumar S., Gautam V., Dixit N.K., Subramanian K., Ghosh T.S., Sengupta D., Gupta S.K., Murugan A.N., Sharma D., Ahuja G.

eLife

doi.org/10.7554/eLife.106397 →
2025
PREPRINT

Chemical Dice Integrator (CDI): a scalable framework for multimodal molecular representation learning

Ahuja G., Kumar S., Solanki S., Gupta M., Mohanty S.K., Satija S., Chauhan S., Duari S., Sharma A., Gautam V., Arora S., Shome R., Sinha S., Sharma A.K., Mittal A., Sengupta D., Murugan N.A.

bioRxiv

doi.org/10.1101/2025.11.11.687860 →
2026
JOURNAL

Mechanism-aware deep learning maps the redox landscape of cancer-relevant antioxidants

Satija S., Solanki S., Ahuja G.

Chemistry — Methods, 6(4), e202500160

doi.org/10.1002/cmtd.202500160 →
2020
DATASET

The role of the systems biology program in health and disease: from biological networks to modern medicine

Solanki S.

Zenodo

doi.org/10.5281/zenodo.4266067 →
2019
CONFERENCE

Improved bioconversion of corn stover into polyhydroxyalkanoate (PHA) using Geobacillus sp. biofilm

Solanki S., Govil T., Kumar S., Salem D.R., Sani R.K.

Intl. Conf. on Recent Trends in Biotechnology & Bioinformatics (ICBAB), JUIT

2019
RESEARCH

Engineering Geobacillus sp. LC-41 for resistance towards catabolite repression

Hogan Z., Solanki S., Govil T., Salem D.R., Sani R.K.

BuG ReMeDEE Consortium, South Dakota School of Mines & Technology

2018
JOURNAL

Effect of growth hormones on in-vitro propagation and secondary metabolite production in Stevia rebaudiana

Solanki S. et al.

Plant biotechnology & tissue culture

2018
RESEARCH

GC analysis of in-vitro developed shoots of Stevia rebaudiana through rapid tissue culture

Solanki S., Singh A., Sood H.

Direct organogenesis for rapid in-vitro propagation of Stevia rebaudiana

A complete and current list is available on Google Scholar.

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Experience & education

Research
2022 — Present

Research Scholar — Computational Biology

Indraprastha Institute of Information Technology (IIIT-Delhi)
Deep learning for molecular systems — GPCR signalling, multimodal molecular representation learning, and mechanism-aware models.
2019

Research Assistant — Sani Lab / BuG ReMeDEE Consortium

South Dakota School of Mines & Technology, USA
Engineering thermophilic Geobacillus strains for biopolymer (PHA) production and resistance to catabolite repression; designed wet-lab experiments and supervised undergraduate researchers.
2018

Research Assistant — Microbial Fuel Cells

Netaji Subhas Institute of Technology (NSIT), Delhi
Designed and fabricated two-cell microbial fuel cells for simultaneous wastewater treatment and electricity generation.
2017

Research Fellow — Enzyme Biocatalysis

Delhi Technological University (DTU)
Lipase-mediated transesterification for biodiesel production; protein estimation and lipolytic-potential assays.
Education
2020 — 2022

M.Tech, Biotechnology

Maharshi Dayanand University
2015 — 2019

B.Tech (Hons.), Biotechnology

Jaypee University of Information Technology (JUIT), Waknaghat
Science communication & ventures
2021 — Present

Founder & CEO — BioSolanki

Building a biotechnology ecosystem for students and professionals
2016 — 2022

Scientific Illustrator & Consultant

SciIllustrator (Founder) · Kolabtree
Graphical abstracts, infographics and technical figures for publications, grants and outreach (BioRender, Adobe).
2020 — Present

Regional Ambassador — Breast Cancer Hub

Awareness, screening access and patient guidance in developing countries
Honours, certifications & service
2025 — 2026

Lindau Nobel Laureate Meeting — Chemistry

Selected participant
2023

DST INSPIRE Fellowship

Department of Science & Technology, Government of India
Certifications

Writing in the Sciences — Stanford University

Understanding Research Methods · Recent Advances in Molecular Biology: A Multiomics Approach
Membership

OWSD — Organization for Women in Science for the Developing World

Skills

Artificial Intelligence · Statistics & Design of Experiments · Scientific Illustration

Languages: English, Hindi